PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1569s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 534aa    MW: 59701.7 Da    PI: 8.5405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1569s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12357402555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e ++sLq
  Cagra.1569s0004.1.p 357 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTVAREQLSSLQ 402
                          8899********************97.....8**************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-15350417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.761352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.65E-11354403No hitNo description
Gene3DG3DSA:4.10.280.107.6E-14356420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9357402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDAFFLMDDP NTRKQLVGSL AQAFRCVYVC LWSYYFPRPS NYLIAMDGYY NEASEEPSSS  60
SSVGLARSLF LEYRQSVIPL QNGHVPSMAI MNNLPYVEIR QQEIQRLAYN DAQRLFYQVT  120
KIITTVIFMG CRSGEIELGM TYDATNMKIE ASLREWFPED FNRNSSPVNS VDHLRPPPHP  180
SSSSSSLSPN NISEYSSLLF PLIPKPSTTT DAVNVPVHPL LAPTNMIHHQ LQQQEPLFRN  240
RQREEEAMTQ AILAVLTGPG PGPSSPPSTS SSPLRKGRAT AFKRYYCTIN GGGRGPPQSS  300
VLKQGMMKRA VSFYTRLNIH RRERLARENA TTGGDGSSGS GGGGRYTSGP SATQLHHMIS  360
ERKRREKLNE SFQALRSLLP PGTKKDKASV LTVAREQLSS LQEGISKLLE RNRELEAKLA  420
GEKETENDLQ PDEMFNVRIR HVPESTSRER ILDLRVVLRG DIIRVEDLMI RLLEFLKQIN  480
NVSVASIEAQ TQARADGDSS IVLVSLRLKI IEGEWDESAF QEAVRRVVAD LAD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365ERKRRE
2361366RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240351e-175AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026881e-175CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483181.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLR0GQ200.0R0GQ20_9BRAS; Uncharacterized protein
STRINGAT5G56960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein